Description

fatty acid desaturase 1 [Source:HGNC Symbol;Acc:HGNC:3574]

Synonyms

D5D, FADS6, FADSD5, LLCDL1, TU12

Location
INSDC coordinates

chromosome:GRCh38:CM000673.2:61799625:61829318:1

Transcripts



This gene has 21 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
FADS1-001ENST000003509974525501 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8011C9J425 C9JJB3 F5GYH4
F5H0Y2 F5H1Q7 F5H2H3
F5H3P6 F5H5X5 F5H852
F5H8G5 I3ZNE3 I3ZNH3
I3ZNL2 I3ZNL9 I3ZNN6
I3ZNS1 I3ZNS3 I3ZNS6
I3ZNT3
NM_013402
NP_037534
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
FADS1-022ENST000005369912701192 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5H3P6 F5H3U5 I3ZNE3
I3ZNH3 I3ZNL2 I3ZNL9
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FADS1-012ENST000005425061725360 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J425 C9JJB3 F5GYH4
F5H0Y2 F5H1Q7 F5H2H3
F5H3P6 F5H5X5 F5H852
F5H8G5 I3ZNE3 I3ZNH3
I3ZNL2 I3ZNL9 I3ZNN6
I3ZNS1 I3ZNS3 I3ZNS6
I3ZNT3 O60427
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FADS1-002ENST000004339321690360 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J425 C9JJB3 F5GYH4
F5H0Y2 F5H1Q7 F5H2H3
F5H3P6 F5H5X5 F5H852
F5H8G5 I3ZNE3 I3ZNH3
I3ZNL2 I3ZNL9 I3ZNN6
I3ZNS1 I3ZNS3 I3ZNS6
I3ZNT3 O60427
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FADS1-004ENST000004606491559146 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5H3P6 I3ZNE3 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FADS1-016ENST00000540767742165 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J425 C9JJB3 F5GWE3
F5GYH4 F5H0Y2 F5H1Q7
F5H2H3 F5H5X5 F5H852
I3ZNN6 I3ZNS1 I3ZNS3
I3ZNS6 I3ZNT3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-019ENST00000545245709164 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J425 C9JJB3 F5GYH4
F5H0Y2 F5H1Q7 F5H2H3
F5H5X5 F5H852 I3ZNN6
I3ZNS1 I3ZNS3 I3ZNS6
I3ZNT3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-009ENST00000466716640111 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J425 F5H0Y2 F5H1Q7
F5H2H3 I3ZNN6 I3ZNS1
I3ZNS3 I3ZNS6 I3ZNT3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-005ENST00000421879583139 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J425 C9JJB3 F5H0Y2
F5H1Q7 F5H2H3 F5H5X5
I3ZNN6 I3ZNS1 I3ZNS3
I3ZNS6 I3ZNT3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-018ENST00000545405582153 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J425 C9JJB3 F5GYH4
F5H0Y2 F5H1Q7 F5H2H3
F5H5X5 I3ZNN6 I3ZNS1
I3ZNS3 I3ZNS6 I3ZNT3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-014ENST00000544309581109 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J425 F5H0Y2 F5H1Q7
I3ZNN6 I3ZNS1 I3ZNS3
I3ZNS6 I3ZNT3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-010ENST0000047326357416 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-017ENST00000544696567112 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J425 F5H0Y2 F5H1Q7
F5H2H3 F5H5X5 I3ZNN6
I3ZNS1 I3ZNS3 I3ZNS6
I3ZNT3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-020ENST0000053941956386 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J425 F5H1Q7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-006ENST0000044860755947 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J425 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-007ENST00000491310525175 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3ZNN6 I3ZNS1 I3ZNS3
I3ZNS6 I3ZNT3
-CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-013ENST00000539999405124 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5H8G5 I3ZNH3 I3ZNL2
I3ZNL9
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-008ENST00000424501926228 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-C9J425 F5H1Q7 I3ZNN6
I3ZNS1 I3ZNS3 I3ZNS6
I3ZNT3
-CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-015ENST000005416831844No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--NR_031729
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-021ENST00000496123693No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FADS1-023ENST00000545986574No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays