Description

structure specific recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:11327]

Synonyms

FACT80

Location
INSDC coordinates

chromosome:GRCh38:CM000673.2:57325985:57335877:1

About this gene

This gene has 4 transcripts (splice variants), 72 orthologues, 4 paralogues, is a member of 1 Ensembl protein family and is associated with 106 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SSRP1-001ENST000002784122819709aaENSP00000278412
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7952A0A024R4Z6 Q08945 NM_003146
NP_003137
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
SSRP1-004ENST000005266961007192aaENSP00000431154
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PMD4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SSRP1-003ENST00000529002844154aaENSP00000434546
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PPZ7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SSRP1-002ENST000002938806296No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays