Description

trophoblast glycoprotein [Source:HGNC Symbol;Acc:HGNC:12004]

Synonyms

5T4, 5T4-AG

Location
INSDC coordinates

chromosome:GRCh38:CM000668.2:82363206:82370828:1

About this gene

This gene has 3 transcripts (splice variants), 55 orthologues, 1 paralogue, is a member of 1 Ensembl protein family and is associated with 48 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
TPBG-001ENST000003697506484420aaENSP00000358765
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4995Q13641 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

TPBG-201ENST000005350403392420aaENSP00000441219
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4995Q13641 NM_006670
NP_006661
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

TPBG-202ENST000005434962881420aaENSP00000440049
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4995Q13641 NM_001166392
NP_001159864
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gene-based displays