Description

chromosome 11 open reading frame 1 [Source:HGNC Symbol;Acc:HGNC:1163]

Synonyms

FLJ23499

INSDC coordinates

chromosome:GRCh38:CM000673.2:111878935:111885975:1

About this gene

This gene has 5 transcripts (splice variants), 47 orthologues, is a member of 1 Ensembl protein family and is associated with 20 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
C11orf1-001ENST000002602762885150aaENSP00000260276
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8350Q9H5F2 NM_022761
NP_073598
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

C11orf1-002ENST000005292701437190aaENSP00000431180
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PMC1 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
C11orf1-005ENST00000530214599121aaENSP00000435864
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PS93 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
C11orf1-003ENST00000528125534104aaENSP00000433224
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PLN1 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
C11orf1-004ENST00000530799509142aaENSP00000432128
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PS33 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays