Description

transcription factor CP2 [Source:HGNC Symbol;Acc:HGNC:11748]

Synonyms

CP2, LBP-1C, LSF, TFCP2C

Location
INSDC coordinates

chromosome:GRCh38:CM000674.2:51093663:51173134:1

About this gene

This gene has 5 transcripts (splice variants), 63 orthologues, 5 paralogues, is a member of 1 Ensembl protein family and is associated with 73 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
TFCP2-001ENST000002579153546502aaENSP00000257915
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8808A0A024R120 Q12800 NM_001173452
NM_005653
NP_001166923
NP_005644
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

TFCP2-004ENST000005481151862450aaENSP00000447991
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS55827Q12800 NM_001173453
NP_001166924
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TFCP2-002ENST000005498671727424aaENSP00000449742
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VX55 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TFCP2-005ENST000005481081508381aaENSP00000449280
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VWL0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TFCP2-007ENST00000546822794No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays