Description

sorting nexin 9 [Source:HGNC Symbol;Acc:HGNC:14973]

Synonyms

SDP1, SH3PX1, SH3PXD3A

INSDC coordinates

chromosome:GRCh38:CM000668.2:157700387:157945077:1

About this gene

This gene has 4 transcripts (splice variants), 71 orthologues, 2 paralogues, is a member of 2 Ensembl protein families and is associated with 86 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SNX9-001ENST000003921854198595aaENSP00000376024
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5253Q9Y5X1 NM_016224
NP_057308
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
SNX9-201ENST000006111244024594aaENSP00000482087
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087WYU1 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SNX9-003ENST0000061480055363aaENSP00000479382
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087WVE4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SNX9-002ENST0000061470354284aaENSP00000482920
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087WZW2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays