Description

shugoshin-like 1 (S. pombe) [Source:HGNC Symbol;Acc:HGNC:25088]

Synonyms

NY-BR-85

Location
INSDC coordinates

chromosome:GRCh38:CM000665.2:20160593:20186292:1

About this gene

This gene has 13 transcripts (splice variants), 64 orthologues, is a member of 2 Ensembl protein families and is associated with 72 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SGOL1-002ENST000004129972587527aaENSP00000410458
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46773B5BUA4 Q5FBB7 NM_001012409
NM_001199251
NP_001012409
NP_001186180
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI4APPRIS candidate principal isoform (longest CCDS)
Glossary entry for APPRIS
APPRIS website
SGOL1-009ENST000002637532338561aaENSP00000263753
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS33716Q5FBB7 NM_001012410
NM_001199252
NP_001012410
NP_001186181
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SGOL1-012ENST000004427202266258aaENSP00000394957
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46772Q5FBB7 NM_001012413
NM_001199255
NP_001012413
NP_001186184
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
SGOL1-010ENST000004214511969561aaENSP00000414129
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS33716Q5FBB7 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SGOL1-005ENST000004192331582309aaENSP00000394625
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46771Q5FBB7 NM_001012412
NM_001199254
NP_001012412
NP_001186183
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SGOL1-001ENST000003066981531292aaENSP00000306581
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2635A0A024R2J4 Q5FBB7 NM_001199256
NM_138484
NP_001186185
NP_612493
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SGOL1-006ENST000004250611213309aaENSP00000414960
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46771Q5FBB7 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SGOL1-003ENST000004370511187275aaENSP00000389034
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46774Q5FBB7 NM_001012411
NP_001012411
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
SGOL1-015ENST000004520201162292aaENSP00000411200
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2635A0A024R2J4 Q5FBB7 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SGOL1-004ENST000004173641075275aaENSP00000394613
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46774Q5FBB7 NM_001199253
NP_001186182
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
SGOL1-007ENST00000443724931215aaENSP00000413070
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56243Q5FBB7 NM_001199257
NP_001186186
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SGOL1-018ENST0000045662466384aaENSP00000397672
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-F8WB17 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SGOL1-017ENST00000460637980No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays