Description

SRY (sex determining region Y)-box 15 [Source:HGNC Symbol;Acc:HGNC:11196]

Synonyms

SOX20, SOX26, SOX27

Location
INSDC coordinates

chromosome:GRCh38:CM000679.2:7588178:7590170:1

About this gene

This gene has 3 transcripts (splice variants), 35 orthologues, 16 paralogues, is a member of 1 Ensembl protein family and is associated with 14 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SOX15-001ENST000002500551396233aaENSP00000355354
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS32549O60248 NM_006942
NP_008873
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
SOX15-002ENST000005385131050233aaENSP00000439311
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS32549O60248 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
SOX15-003ENST000005707881093178aaENSP00000458286
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-O60248 -TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website

Gene-based displays