Description

SAM pointed domain containing ETS transcription factor [Source:HGNC Symbol;Acc:HGNC:17257]

Synonyms

bA375E1.3, PDEF

Location
INSDC coordinates

chromosome:GRCh38:CM000668.2:34537802:34556333:1

About this gene

This gene has 2 transcripts (splice variants), 67 orthologues, 11 paralogues, is a member of 1 Ensembl protein family and is associated with 60 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SPDEF-001ENST000003740371895335aaENSP00000363149
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4794O95238 NM_012391
NP_036523
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P3

PRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SPDEF-201ENST000005444251866319aaENSP00000442715
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS59013O95238 NM_001252294
NP_001239223
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1

ALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gene-based displays