Description

hippocalcin-like 1 [Source:HGNC Symbol;Acc:HGNC:5145]

Synonyms

BDR1, HLP2, VILIP-3

Location
INSDC coordinates

chromosome:GRCh38:CM000664.2:10302889:10427617:1

About this gene

This gene has 8 transcripts (splice variants), 63 orthologues, 13 paralogues, is a member of 3 Ensembl protein families and is associated with 45 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
HPCAL1-202ENST000006207711941193aaENSP00000483786
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1671P37235 Q6FGY1 NM_001258359
NP_001245288
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
HPCAL1-002ENST000003817651904193aaENSP00000371184
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1671P37235 Q6FGY1 NM_134421
NP_602293
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
HPCAL1-001ENST000003078451751193aaENSP00000310749
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1671P37235 Q6FGY1 NM_002149
NP_002140
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
HPCAL1-201ENST000006134961547193aaENSP00000478231
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1671P37235 Q6FGY1 NM_001258358
NP_001245287
TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
HPCAL1-203ENST000006220181535193aaENSP00000482993
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1671P37235 Q6FGY1 NM_001258357
NP_001245286
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
HPCAL1-005ENST00000422133587103aaENSP00000388856
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7BZC1 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HPCAL1-004ENST0000042367458630aaENSP00000413689
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JW46 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HPCAL1-003ENST000004198104781175aaENSP00000416359
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-E9PC71 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays