Description

uroplakin 1B [Source:HGNC Symbol;Acc:HGNC:12578]

Synonyms

TSPAN20, UPK1

INSDC coordinates

chromosome:GRCh38:CM000665.2:119173517:119205153:1

About this gene

This gene has 5 transcripts (splice variants), 52 orthologues, 1 paralogue, is a member of 1 Ensembl protein family and is associated with 40 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
UPK1B-001ENST000002642342118260aaENSP00000264234
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2985O75841 NM_006952
NP_008883
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

UPK1B-003ENST000004606251937252aaENSP00000418116
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J9M7 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
UPK1B-002ENST00000497685981180aaENSP00000418972
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7ETN9 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
UPK1B-004ENST00000479520687169aaENSP00000418399
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J6N2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UPK1B-005ENST00000494855670189aaENSP00000418597
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J027 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays