Description

bobby sox homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:14422]

Synonyms

HBP2, HSPC339, MDS001

INSDC coordinates

chromosome:GRCh38:CM000665.2:107522936:107811324:1

Transcripts

This gene has 26 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
BBX-001ENST000004151498930911 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2950C9IYS9 C9J067 C9J0J4
C9J8D0 C9JC04 C9JE62
C9JIZ2 C9JNU3 C9JSH4
C9JYU6 C9JZA0 C9K0D1
D3DN56 Q8WY36
NM_020235
NP_064620
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
BBX-005ENST000004067803674911 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2950C9IYS9 C9J067 C9J0J4
C9J8D0 C9JC04 C9JE62
C9JIZ2 C9JNU3 C9JSH4
C9JYU6 C9JZA0 C9K0D1
D3DN56 Q8WY36
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
BBX-007ENST000003258053517941 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46881C9IYS9 C9J067 C9J0J4
C9J8D0 C9JC04 C9JE62
C9JIZ2 C9JNU3 C9JSH4
C9JYU6 C9JZA0 C9K0D1
Q8WY36 Q9H6A7
NM_001142568
NP_001136040
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI2APPRIS candidate principal isoform (longest CCDS)
Glossary entry for APPRIS
APPRIS website
BBX-006ENST000004164762178628 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS63712C9IYS9 C9J067 C9J0J4
C9JC04 C9JE62 C9JIZ2
C9JNU3 C9JSH4 C9JYU6
C9JZA0 C9K0D1 Q8WY36
NM_001276286
NP_001263215
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
BBX-002ENST000004025433980891 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IYS9 C9J067 C9J0J4
C9J8D0 C9JA69 C9JC04
C9JE62 C9JIZ2 C9JNU3
C9JSH4 C9JYU6 C9JZA0
C9K0D1
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
BBX-004ENST000004021631586448 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IYS9 C9J067 C9J0J4
C9J8D0 C9JC04 C9JE62
C9JIZ2 C9JNU3 C9JSH4
C9JYU6 C9JZA0 C9K0D1
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-009ENST00000427402959193 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IYS9 C9J067 C9J0J4
C9JC04 C9JE62 C9JIZ2
C9JNU3 C9JSH4 C9JYU6
C9K0D1
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-015ENST00000456419871205 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IYS9 C9J067 C9J0J4
C9JC04 C9JE62 C9JIZ2
C9JNU3 C9JSH4 C9JYU6
C9JZA0 C9K0D1
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-020ENST00000449213843159 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IYS9 C9J067 C9J0J4
C9JC04 C9JE62 C9JIZ2
C9JNU3 C9K0D1
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-018ENST00000413213819149 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IYS9 C9J067 C9J0J4
C9JC04 C9JE62 C9JIZ2
C9JNU3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-011ENST00000449335675144 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IYS9 C9J067 C9J0J4
C9JC04 C9JE62 C9JNU3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-010ENST00000431630601119 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IYG9 C9J067 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-012ENST0000045681758171 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IYS9 C9J067 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-021ENST0000045749655685 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IYS9 C9J067 C9JC04
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-017ENST00000449271552114 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IYS9 C9J067 C9J0J4
C9JC04 C9JE62
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-019ENST0000042586855024 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J067 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-022ENST00000429270539166 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IYS9 C9J067 C9J0J4
C9JC04 C9JE62 C9JIZ2
C9JNU3 C9JSH4 C9K0D1
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-013ENST0000045845851398 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IYS9 C9J067 C9JC04
C9JE62
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-026ENST00000458347410131 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7C1Q0 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-028ENST0000045454039213 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-027ENST0000044325323880 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-025ENST00000473542581No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-016ENST00000485939555No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-023ENST00000472032549No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-024ENST00000497629563No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BBX-008ENST00000474137546No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays