Description

vitamin D (1,25- dihydroxyvitamin D3) receptor [Source:HGNC Symbol;Acc:HGNC:12679]

Synonyms

NR1I1, PPP1R163

Location
INSDC coordinates

chromosome:GRCh38:CM000674.2:47841537:47943048:1

Transcripts

This gene has 8 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
VDR-201ENST000002290224773427 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8757F1D8P8 F8VPF8 F8VRJ4
F8VVY8 F8VXQ9 P11473
Q6T928 T1WSQ6
NM_001017535
NP_001017535
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
VDR-001ENST000003953244762427 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8757F1D8P8 F8VPF8 F8VRJ4
F8VVY8 F8VXQ9 P11473
Q6T928 T1WSQ6
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
VDR-004ENST000005493364644427 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8757F1D8P8 F8VPF8 F8VRJ4
F8VVY8 F8VXQ9 P11473
Q6T928 T1WSQ6
NM_000376
NP_000367
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
VDR-002ENST000005503253925477 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS55820F1D8P8 F8VPF8 F8VRJ4
F8VVY8 F8VXQ9 P11473
Q6T928 T1WSQ6
NM_001017536
NP_001017536
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
VDR-007ENST00000546653937250 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VPF8 F8VRJ4 F8VVY8
F8VXQ9
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

VDR-006ENST00000548664596101 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VPF8 F8VXQ9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

VDR-008ENST00000550314562106 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VPF8 F8VVY8 F8VXQ9
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

VDR-003ENST00000547065178249 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-F8VXQ9 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays