Description

chromobox homolog 1 [Source:HGNC Symbol;Acc:HGNC:1551]

Synonyms

CBX, HP1-BETA, HP1Hs-beta, M31, MOD1

Location
INSDC coordinates

chromosome:GRCh38:CM000679.2:48070052:48101521:1

Transcripts

This gene has 6 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
CBX1-002ENST000003934082422185 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11525C9JWS9 J3KS05 K7ELA4
P83916 Q6IBN6
NM_006807
NP_006798
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
CBX1-001ENST000002256032232185 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11525C9JWS9 J3KS05 K7ELA4
P83916 Q6IBN6
NM_001127228
NP_001120700
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
CBX1-006ENST00000581003812174 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JWS9 J3KS05 K7ELA4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CBX1-004ENST00000402583578168 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B5MD17 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CBX1-005ENST00000495350550138 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JWS9 K7ELA4 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CBX1-003ENST00000444685544110 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JWS9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays