Description

chromobox homolog 1 [Source:HGNC Symbol;Acc:HGNC:1551]

Synonyms

CBX, HP1-BETA, HP1Hs-beta, M31, MOD1

Location
INSDC coordinates

chromosome:GRCh38:CM000679.2:48070052:48101521:1

About this gene

This gene has 6 transcripts (splice variants), 88 orthologues, 2 paralogues, is a member of 1 Ensembl protein family and is associated with 26 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CBX1-002ENST000003934082422185aaENSP00000377060
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11525P83916 Q6IBN6 NM_006807
NP_006798
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CBX1-001ENST000002256032232185aaENSP00000225603
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11525P83916 Q6IBN6 NM_001127228
NP_001120700
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CBX1-006ENST00000581003812174aaENSP00000462242
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-J3KS05 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT1

ALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CBX1-004ENST00000402583578168aaENSP00000385413
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B5MD17 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CBX1-005ENST00000495350550138aaENSP00000465985
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7ELA4 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CBX1-003ENST00000444685544110aaENSP00000393179
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JWS9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays