Description

transcription factor A, mitochondrial [Source:HGNC Symbol;Acc:HGNC:11741]

Synonyms

TCF6, TCF6L2

Location
INSDC coordinates

chromosome:GRCh38:CM000672.2:58385022:58399221:1

About this gene

This gene has 4 transcripts (splice variants), 70 orthologues, is a member of 1 Ensembl protein family and is associated with 37 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
TFAM-002ENST000004875195414246aaENSP00000420588
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7253E5KSU5 Q00059 NM_003201
NP_003192
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
TFAM-004ENST00000373895973214aaENSP00000363002
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS59217Q00059 NM_001270782
NP_001257711
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TFAM-001ENST00000395377663219aaENSP00000378776
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7BYN3 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TFAM-003ENST000003738991121No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays