Description

progastricsin (pepsinogen C) [Source:HGNC Symbol;Acc:HGNC:8890]

Location
INSDC coordinates

chromosome:GRCh38:CM000668.2:41736711:41754109:1

About this gene

This gene has 4 transcripts (splice variants), 87 orthologues, 10 paralogues, is a member of 3 Ensembl protein families and is associated with 63 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
PGC-001ENST000003730251371388aaENSP00000362116
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4859P20142 NM_002630
NP_002621
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PGC-201ENST000004253431152315aaENSP00000405094
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS55000P20142 NM_001166424
NP_001159896
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PGC-003ENST00000356667480140aaENSP00000349094
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q4VXA6 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PGC-004ENST0000041570739986aaENSP00000399429
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2A3L9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays