Description

polycystic kidney disease 2-like 2 [Source:HGNC Symbol;Acc:HGNC:9012]

Synonyms

TRPP5

INSDC coordinates

chromosome:GRCh38:CM000667.2:137887968:137942747:1

Transcripts



This gene has 7 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
PKD2L2-006ENST000005086382333523 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58971D6RBX8 D6RF71 PKD2L2-006
Q9NZM6
NM_001258449
NP_001245378
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PKD2L2-008ENST000002904312202613 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS43367D6RBX8 D6RF71 PKD2L2-008
Q9NZM6
NM_014386
NP_055201
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PKD2L2-002ENST000005028102185602 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58972D6RBX8 D6RF71 PKD2L2-002
Q9NZM6
NM_001258448
NP_001245377
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PKD2L2-001ENST000005088832282624 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RBX8 D6RF71 PKD2L2-001
Q9NZM6
NM_001300921
NP_001287850
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
PKD2L2-005ENST000005030151927182 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RBX8 D6RF71 PKD2L2-005
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PKD2L2-007ENST0000051117683084 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RBX8 PKD2L2-007 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PKD2L2-003ENST0000041409493057 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-PKD2L2-003 Q9NZM6 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays