Description

Spi-1 proto-oncogene [Source:HGNC Symbol;Acc:HGNC:11241]

Synonyms

OF, PU.1, SFPI1, SPI-1, SPI-A

Location
INSDC coordinates

chromosome:GRCh38:CM000673.2:47354860:47378576:1

About this gene

This gene has 4 transcripts (splice variants), 67 orthologues, 3 paralogues, is a member of 2 Ensembl protein families and is associated with 38 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SPI1-001ENST000003785381403270aaENSP00000367799
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7933P17947 NM_003120
NP_003111
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P3

PRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SPI1-004ENST000002271631168271aaENSP00000227163
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44591P17947 NM_001080547
NP_001074016
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1

ALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SPI1-002ENST000005339681290245aaENSP00000438846
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5H3K6 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SPI1-003ENST0000053303066135aaENSP00000443865
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5GZ94 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Gene-based displays