Description

high mobility group box 3 [Source:HGNC Symbol;Acc:HGNC:5004]

Synonyms

HMG2A, HMG4, MGC90319

INSDC coordinates

chromosome:GRCh38:CM000685.2:150980509:150990775:1

About this gene

This gene has 5 transcripts (splice variants), 69 orthologues, 3 paralogues, is a member of 1 Ensembl protein family and is associated with 38 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
HMGB3-001ENST000003253073560200aaENSP00000359393
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS35428O15347 NM_001301228
NM_001301229
NM_001301231
NM_005342
NP_001288157
NP_001288158
NP_001288160
NP_005333
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
HMGB3-201ENST00000448905812200aaENSP00000442758
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS35428O15347 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
HMGB3-003ENST00000455596793193aaENSP00000405601
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7EQU1 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
HMGB3-002ENST00000419110707188aaENSP00000410354
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7ES08 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
HMGB3-004ENST00000430118529153aaENSP00000417027
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PES6 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays