Description

jumonji, AT rich interactive domain 2 [Source:HGNC Symbol;Acc:HGNC:6196]

Synonyms

JMJ

Location
INSDC coordinates

chromosome:GRCh38:CM000668.2:15246296:15522040:1

About this gene

This gene has 3 transcripts (splice variants), 68 orthologues, 4 paralogues, is a member of 1 Ensembl protein family and is associated with 200 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
JARID2-001ENST0000034177657551246aaENSP00000341280
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4533Q92833 NM_004973
NP_004964
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P3

PRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

JARID2-201ENST0000039731155951074aaENSP00000380478
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58996Q92833 NM_001267040
NP_001253969
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

JARID2-002ENST00000474854520No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays