Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC00494 ENSG00000235621

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Description

long intergenic non-protein coding RNA 494 [Source:HGNC Symbol;Acc:HGNC:27657]

Location

Chromosome 20: 48,359,884-48,370,636 forward strand.

GRCh38:CM000682.2

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000416742.5	LINC00494-201	3544	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000655482.1	LINC00494-206	3418	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000545181.5	LINC00494-204	3343	No protein	-	lncRNA		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000433094.1	LINC00494-203	3071	No protein	-	lncRNA		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000660785.1	LINC00494-207	2630	No protein	-	lncRNA		-	-
ENST00000692154.1	LINC00494-216	2310	No protein	-	lncRNA		-	-
ENST00000670842.1	LINC00494-214	1839	No protein	-	lncRNA		-	-
ENST00000663665.1	LINC00494-208	1535	No protein	-	lncRNA		-	-
ENST00000669055.1	LINC00494-211	1426	No protein	-	lncRNA		-	-
ENST00000670744.1	LINC00494-213	1385	No protein	-	lncRNA		-	-
ENST00000666125.1	LINC00494-209	1329	No protein	-	lncRNA		-	-
ENST00000667132.1	LINC00494-210	1231	No protein	-	lncRNA		-	-
ENST00000671184.1	LINC00494-215	1118	No protein	-	lncRNA		-	-
ENST00000669689.1	LINC00494-212	1054	No protein	-	lncRNA		-	-
ENST00000425021.2	LINC00494-202	638	No protein	-	lncRNA		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000775434.1	LINC00494-217	627	No protein	-	lncRNA		-	-
ENST00000652930.1	LINC00494-205	595	No protein	-	lncRNA		-	-

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Summary

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