Description

KRIT1, ankyrin repeat containing [Source:HGNC Symbol;Acc:HGNC:1573]

Synonyms

CAM, CCM1

Location
INSDC coordinates

chromosome:GRCh38:CM000669.2:92198969:92246166:1

Transcripts



This gene has 25 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
KRIT1-201ENST000003945074762736 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5624A4D1F7 C9J3W7 C9J718
C9JBN7 C9JD81 C9JEW7
C9JF32 C9JI47 C9JJM9
C9JSG7 C9JXI9 CCM1-201
O00522
NM_194456
NP_919438
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
KRIT1-001ENST000003400224553736 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5624A4D1F7 C9J3W7 C9J718
C9JBN7 C9JD81 C9JEW7
C9JF32 C9JI47 C9JJM9
C9JSG7 C9JXI9 CCM1-001
O00522
NM_004912
NM_194455
NP_004903
NP_919437
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
KRIT1-005ENST000004120433378736 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5624A4D1F7 C9J3W7 C9J718
C9JBN7 C9JD81 C9JEW7
C9JF32 C9JI47 C9JJM9
C9JSG7 C9JXI9 CCM1-005
O00522
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
KRIT1-004ENST000003945053143736 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5624A4D1F7 C9J3W7 C9J718
C9JBN7 C9JD81 C9JEW7
C9JF32 C9JI47 C9JJM9
C9JSG7 C9JXI9 CCM1-004
O00522
NM_194454
NP_919436
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
KRIT1-003ENST000003945032827688 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34679C9J3W7 C9J718 C9JBN7
C9JD81 C9JEW7 C9JF32
C9JI47 C9JJM9 C9JSG7
C9JXI9 CCM1-003 O00522
NM_001013406
NP_001013424
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
KRIT1-202ENST000006116773056565 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J3W7 C9J718 C9JBN7
C9JD81 C9JEW7 C9JF32
C9JI47 C9JJM9 C9JSG7
C9JXI9 CCM1-202
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
KRIT1-002ENST000004581771472243 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J3W7 C9J718 C9JBN7
C9JD81 C9JEW7 C9JF32
C9JI47 C9JJM9 C9JSG7
C9JXI9 CCM1-002 O00522
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-016ENST00000454017978162 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J3W7 C9J718 C9JBN7
C9JD81 C9JEW7 C9JI47
C9JJM9 C9JSG7 C9JXI9
CCM1-016
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-011ENST00000433016855184 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J3W7 C9J718 C9JBN7
C9JD81 C9JEW7 C9JF32
C9JI47 C9JJM9 C9JSG7
C9JXI9 CCM1-011
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-008ENST0000044496078334 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JI47 C9JXI9 CCM1-008
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-018ENST0000043010270298 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J3W7 C9JBN7 C9JD81
C9JI47 C9JJM9 C9JSG7
C9JXI9 CCM1-018
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-012ENST0000045277366558 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JI47 C9JJM9 C9JSG7
C9JXI9 CCM1-012
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-014ENST0000042591957238 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JI47 C9JSG7 C9JXI9
CCM1-014
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-022ENST00000445516561164 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JIY2 CCM1-022 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-015ENST00000440209557112 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J3W7 C9JBN7 C9JD81
C9JEW7 C9JI47 C9JJM9
C9JSG7 C9JXI9 CCM1-015
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-017ENST0000041368855169 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J3W7 C9JD81 C9JI47
C9JJM9 C9JSG7 C9JXI9
CCM1-017
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-020ENST0000042507354612 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-CCM1-020 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-013ENST0000045849350765 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JD81 C9JI47 C9JJM9
C9JSG7 C9JXI9 CCM1-013
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-009ENST0000042234748325 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JI47 CCM1-009 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-010ENST00000466166545No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
-CCM1-010 -TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-019ENST00000489087512No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
-CCM1-019 -TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-006ENST000004862614057No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
-CCM1-006 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-007ENST000004757702411No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
-CCM1-007 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-023ENST00000487168600No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
-CCM1-023 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

KRIT1-021ENST00000470309580No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
-CCM1-021 -TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays