Description

TLC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25177]

Location
INSDC coordinates

chromosome:GRCh38:CM000679.2:28724348:28727935:1

About this gene

This gene has 4 transcripts (splice variants), 68 orthologues, 1 paralogue, is a member of 2 Ensembl protein families and is associated with 37 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
TLCD1-001ENST000002920901017247aaENSP00000292090
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11242Q96CP7 NM_138463
NP_612472
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
TLCD1-002ENST00000394933784200aaENSP00000378391
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS54102Q96CP7 NM_001160407
NP_001153879
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TLCD1-004ENST00000580518578147aaENSP00000466264
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7ELX5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TLCD1-003ENST0000058123640853aaENSP00000468670
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7ESD9 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays