Description

alpha thalassemia/mental retardation syndrome X-linked [Source:HGNC Symbol;Acc:HGNC:886]

Synonyms

JMS, RAD54, XH2, XNP

Location
INSDC coordinates

chromosome:GRCh38:CM000685.2:77504878:77786269:1

Transcripts

This gene has 19 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
ATRX-001ENST00000373344112202492 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14434A0A067XLH7 A0A068A261 A4LAA3
B4DLE1 P46100
NM_000489
NP_000480
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI2APPRIS candidate principal isoform (longest CCDS)
Glossary entry for APPRIS
APPRIS website
ATRX-002ENST00000395603102182454 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14435A0A067XLH7 A0A068A261 B4DLE1
P46100
NM_138270
NP_612114
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
ATRX-010ENST0000062416642721351 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A067XLH7 A0A068A261 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
ATRX-004ENST000006240323071954 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A067XLH7 A0A068A261 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
ATRX-005ENST000004934702967293 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ATRX-009ENST000006233211860528 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A067XLH7 A0A068A261 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
ATRX-007ENST00000400866814198 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5JX93 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ATRX-012ENST0000062296062847 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
ATRX-015ENST00000625063593198 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A067XLH7 A0A068A261 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
ATRX-013ENST00000624668583108 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A067XLH7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
ATRX-003ENST0000048028310455164 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ATRX-018ENST00000623316803175 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
ATRX-016ENST0000062324272566 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
ATRX-014ENST00000624193463No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
ATRX-011ENST000006237067245No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
ATRX-017ENST00000624403583No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
ATRX-019ENST00000624766580No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
ATRX-006ENST00000460639461No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ATRX-008ENST00000479487408No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays