Description

tripartite motif containing 39 [Source:HGNC Symbol;Acc:HGNC:10065]

Synonyms

RNF23

Location

Chromosome 6: 30,326,479-30,343,729 forward strand.

View alleles of this gene on alternate assemblies

INSDC coordinates

chromosome:GRCh38:CM000668.2:30326479:30343729:1

Transcripts

This gene has 11 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
TRIM39-003ENST000003766593535488 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34378A0A024RCR1 A2AAZ2 A2AAZ3
A2AAZ4 A2AAZ5 A2AAZ6
Q9HCM9
NM_172016
NP_742013
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
TRIM39-201ENST000003766563338518 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34377A0A024RCP5 A2AAZ2 A2AAZ3
A2AAZ4 A2AAZ5 A2AAZ6
Q9HCM9
NM_021253
NP_067076
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TRIM39-004ENST000003965513249488 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34378A0A024RCR1 A2AAZ2 A2AAZ3
A2AAZ4 A2AAZ5 A2AAZ6
Q9HCM9
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
TRIM39-001ENST000003965483198488 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34378A0A024RCR1 A2AAZ2 A2AAZ3
A2AAZ4 A2AAZ5 A2AAZ6
Q9HCM9
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
TRIM39-002ENST000003965473187518 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34377A0A024RCP5 A2AAZ2 A2AAZ3
A2AAZ4 A2AAZ5 A2AAZ6
Q9HCM9
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TRIM39-006ENST000004287281013261 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2AAZ2 A2AAZ3 A2AAZ4
A2AAZ5 A2AAZ6
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TRIM39-005ENST000004585161003144 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2AAZ2 A2AAZ3 A2AAZ4
A2AAZ5
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TRIM39-009ENST00000420746708227 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TRIM39-010ENST0000044027158874 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2AAZ2 A2AAZ3 A2AAZ4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TRIM39-008ENST0000042855545948 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2AAZ2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TRIM39-007ENST0000042840442759 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2AAZ2 A2AAZ3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays