Description

homeobox C6 [Source:HGNC Symbol;Acc:HGNC:5128]

Synonyms

HOX3, HOX3C

Location
INSDC coordinates

chromosome:GRCh38:CM000674.2:53990624:54030823:1

Transcripts

This gene has 4 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
HOXC6-002ENST000003943312943153 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS41792D6RBH4 P09630 NM_153693
NP_710160
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HOXC6-001ENST000002431081733235 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8871D6RBH4 P09630 NM_004503
NP_004494
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
HOXC6-003ENST0000050431553852 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RBH4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HOXC6-004ENST0000050932835871 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RBH4 D6RC34 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays