Description

homeobox C6 [Source:HGNC Symbol;Acc:HGNC:5128]

Synonyms

HOX3, HOX3C

Location
INSDC coordinates

chromosome:GRCh38:CM000674.2:53990624:54030823:1

About this gene

This gene has 4 transcripts (splice variants), 58 orthologues, 15 paralogues, is a member of 3 Ensembl protein families and is associated with 45 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
HOXC6-002ENST000003943312943153aaENSP00000377864
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS41792P09630 NM_153693
NP_710160
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HOXC6-001ENST000002431081733235aaENSP00000243108
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8871P09630 NM_004503
NP_004494
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

HOXC6-003ENST0000050431553852aaENSP00000424124
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RBH4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HOXC6-004ENST0000050932835871aaENSP00000423898
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RC34 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays