Description

zinc finger protein 107 [Source:HGNC Symbol;Acc:HGNC:12887]

Synonyms

smap-7, ZFD25, ZNF588

Location
INSDC coordinates

chromosome:GRCh38:CM000669.2:64666083:64711582:1

About this gene

This gene has 6 transcripts (splice variants), 241 orthologues, 10 paralogues, is a member of 1 Ensembl protein family and is associated with 150 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
ZNF107-001ENST000003953916094783aaENSP00000378789
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5527A0A024R5Y9 Q9UII5 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ZNF107-201ENST000004236275773783aaENSP00000400037
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5527A0A024R5Y9 Q9UII5 NM_016220
NP_057304
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ZNF107-203ENST000006208275685852aaENSP00000483720
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS75605-NM_001282359
NP_001269288
TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI4APPRIS candidate principal isoform (longest CCDS)
Glossary entry for APPRIS
APPRIS website
ZNF107-202ENST000006136905589820aaENSP00000481898
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS75606A0A087WYK5 NM_001282360
NP_001269289
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
ZNF107-002ENST000003449305174783aaENSP00000343443
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5527A0A024R5Y9 Q9UII5 NM_001013746
NP_001013768
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ZNF107-003ENST00000360117106191aaENSP00000353234
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JSF9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays