Description

opticin [Source:HGNC Symbol;Acc:HGNC:8158]

INSDC coordinates

chromosome:GRCh38:CM000663.2:203494143:203508864:1

About this gene

This gene has 2 transcripts (splice variants), 45 orthologues, 2 paralogues, is a member of 1 Ensembl protein family and is associated with 78 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
OPTC-001ENST000003672221359332aaENSP00000356191
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1439Q9UBM4 NM_014359
NP_055174
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

OPTC-002ENST00000448911560174aaENSP00000399491
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5T2G3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays