Description

claudin 6 [Source:HGNC Symbol;Acc:HGNC:2048]

Location
INSDC coordinates

chromosome:GRCh38:CM000678.2:3014712:3020071:1

About this gene

This gene has 3 transcripts (splice variants), 60 orthologues, 12 paralogues, is a member of 2 Ensembl protein families and is associated with 65 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CLDN6-001ENST000003969251739220aaENSP00000380131
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS10488P56747 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
CLDN6-201ENST000003287961369220aaENSP00000328674
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS10488P56747 NM_021195
NP_067018
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
CLDN6-002ENST0000057215446139aaENSP00000458783
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1E7 -TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Gene-based displays