Description

claudin 6 [Source:HGNC Symbol;Acc:HGNC:2048]

Location
INSDC coordinates

chromosome:GRCh38:CM000678.2:3014712:3020071:1

About this gene

This gene has 3 transcripts (splice variants), 37 orthologues, 12 paralogues, is a member of 2 Ensembl protein families and is associated with 65 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CLDN6-001ENST000003969251739220aaENSP00000380131
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS10488P56747 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CLDN6-201ENST000003287961369220aaENSP00000328674
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS10488P56747 NM_021195
NP_067018
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CLDN6-002ENST0000057215446139aaENSP00000458783
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1E7 -TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Gene-based displays