Description

claudin 5 [Source:HGNC Symbol;Acc:HGNC:2047]

Synonyms

AWAL, BEC1, CPETRL1, TMVCF

Location
INSDC coordinates

chromosome:GRCh38:CM000684.2:19523024:19527545:1

About this gene

This gene has 4 transcripts (splice variants), 48 orthologues, 12 paralogues, is a member of 1 Ensembl protein family and is associated with 18 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CLDN5-001ENST000004060282548303aaENSP00000385477
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS13763D3DX19 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLDN5-003ENST000004030842357303aaENSP00000384554
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS13763D3DX19 NM_001130861
NP_001124333
TSL:NA

Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLDN5-002ENST000004131191760303aaENSP00000400612
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS13763D3DX19 NM_003277
NP_003268
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLDN5-004ENST000006182361374218aaENSP00000480623
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-O00501 -TSL:NA

Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gene-based displays