Description

collagen, type VI, alpha 5 [Source:HGNC Symbol;Acc:HGNC:26674]

Synonyms

COL29A1, FLJ35880, VWA4

INSDC coordinates

chromosome:GRCh38:CM000665.2:130345516:130484844:1

About this gene

This gene has 5 transcripts (splice variants), 60 orthologues, 13 paralogues, is a member of 1 Ensembl protein family and is associated with 333 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
COL6A5-201ENST0000026537992142611aaENSP00000265379
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PAL5 NM_001278298
NM_153264
NP_001265227
NP_694996
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

COL6A5-003ENST000005128363138778aaENSP00000422898
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y935 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

COL6A5-002ENST000005124821780443aaENSP00000424968
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y9T2 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

COL6A5-004ENST000003731571770557aaENSP00000362250
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y393 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

COL6A5-001ENST0000031248192262615aaENSP00000309762
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A8TX70 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays