Description

collagen, type VI, alpha 5 [Source:HGNC Symbol;Acc:HGNC:26674]

Synonyms

COL29A1, FLJ35880, VWA4

INSDC coordinates

chromosome:GRCh38:CM000665.2:130345516:130484844:1

About this gene

This gene has 5 transcripts (splice variants), 57 orthologues, 7 paralogues, is a member of 1 Ensembl protein family and is associated with 332 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
COL6A5-201ENST0000026537992142611aaENSP00000265379
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PAL5 NM_001278298
NM_153264
NP_001265227
NP_694996
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
COL6A5-003ENST000005128363138778aaENSP00000422898
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y935 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

COL6A5-002ENST000005124821780443aaENSP00000424968
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y9T2 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

COL6A5-004ENST000003731571770557aaENSP00000362250
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y393 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

COL6A5-001ENST0000031248192262615aaENSP00000309762
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A8TX70 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays