Description

chemokine (C-X-C motif) receptor 6 [Source:HGNC Symbol;Acc:HGNC:16647]

Synonyms

BONZO, CD186, STRL33, TYMSTR

Location
INSDC coordinates

chromosome:GRCh38:CM000665.2:45940933:45948353:1

About this gene

This gene has 4 transcripts (splice variants), 42 orthologues, 20 paralogues, is a member of 1 Ensembl protein family and is associated with 28 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CXCR6-004ENST000004586292805342aaENSP00000395704
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2735A0N0N3 O00574 -TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
CXCR6-002ENST000004387352242342aaENSP00000396218
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2735A0N0N3 O00574 -TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
CXCR6-001ENST000003045521962342aaENSP00000304414
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2735A0N0N3 O00574 NM_006564
NP_006555
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
CXCR6-003ENST000004578141184342aaENSP00000396886
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2735A0N0N3 O00574 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website

Gene-based displays