Description

low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]

Synonyms

LRP-DIT, LRPDIT

INSDC coordinates

chromosome:GRCh38:CM000664.2:140231423:142131701:1

About this gene

This gene has 6 transcripts (splice variants), 60 orthologues, 5 paralogues, is a member of 1 Ensembl protein family and is associated with 1914 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
LRP1B-001ENST00000389484165354599aaENSP00000374135
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2182Q9NZR2 NM_018557
NP_061027
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
LRP1B-201ENST00000618808132194406aaENSP00000478868
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087WUR9 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LRP1B-003ENST000004379773810798aaENSP00000415052
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y7T7 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

LRP1B-002ENST000004347942621782aaENSP00000413239
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7ERG8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

LRP1B-005ENST00000442974839280aaENSP00000393859
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7C0A8 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

LRP1B-004ENST00000486364514No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays