Description

sodium channel, voltage gated, type XI alpha subunit [Source:HGNC Symbol;Acc:HGNC:10583]

Synonyms

NaN, Nav1.9, SCN12A, SNS-2

Location
INSDC coordinates

chromosome:GRCh38:CM000665.2:38845769:38950561:1

About this gene

This gene has 3 transcripts (splice variants), 64 orthologues, 19 paralogues, is a member of 1 Ensembl protein family and is associated with 8 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SCN11A-001ENST0000030232865001791aaENSP00000307599
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS33737Q9UI33 NM_001287223
NM_014139
NP_001274152
NP_054858
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SCN11A-002ENST0000044423757291444aaENSP00000408028
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9UI33 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SCN11A-003ENST0000045622452621753aaENSP00000416757
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9UI33 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Gene-based displays