Description

transglutaminase 6 [Source:HGNC Symbol;Acc:HGNC:16255]

Synonyms

dJ734P14.3, SCA35, TGM3L, TGY

Location
INSDC coordinates

chromosome:GRCh38:CM000682.2:2380908:2432753:1

About this gene

This gene has 3 transcripts (splice variants), 83 orthologues, 8 paralogues, is a member of 1 Ensembl protein family and is associated with 2 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
TGM6-001ENST000002026252292706aaENSP00000202625
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS13025O95932 NM_198994
NP_945345
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

TGM6-002ENST000003814232158625aaENSP00000370831
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58761O95932 NM_001254734
NP_001241663
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TGM6-003ENST00000477505620No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays