Description

claudin 2 [Source:HGNC Symbol;Acc:HGNC:2041]

INSDC coordinates

chromosome:GRCh38:CM000685.2:106900164:106930861:1

About this gene

This gene has 3 transcripts (splice variants), 51 orthologues, 12 paralogues, is a member of 1 Ensembl protein family and is associated with 32 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CLDN2-202ENST000005418063150230aaENSP00000441283
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14524P57739 NM_001171092
NP_001164563
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CLDN2-001ENST000003368032959230aaENSP00000336571
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14524P57739 NM_020384
NP_065117
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CLDN2-201ENST000005408762919230aaENSP00000443230
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14524P57739 NM_001171095
NP_001164566
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gene-based displays