Description

patched domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26392]

Synonyms

FLJ30296

Location
INSDC coordinates

chromosome:GRCh38:CM000685.2:23334015:23404372:1

About this gene

This gene has 3 transcripts (splice variants), 86 orthologues, 6 paralogues, is a member of 2 Ensembl protein families and is associated with 2 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
PTCHD1-002ENST0000037936113714888aaENSP00000368666
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS35215Q96NR3 X5DNX9 NM_173495
NP_775766
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PTCHD1-201ENST000006160222286256aaENSP00000478663
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q96NR3 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PTCHD1-001ENST00000456522736103aaENSP00000406663
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7C2M0 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays