Description

prickle homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:20340]

Synonyms

DKFZp686D143

Location
INSDC coordinates

chromosome:GRCh38:CM000665.2:64093867:64445476:1

About this gene

This gene has 4 transcripts (splice variants), 77 orthologues, 6 paralogues, is a member of 1 Ensembl protein family and is associated with 1 phenotype.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
PRICKLE2-001ENST000002959028305844aaENSP00000295902
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2902A0A024R368 Q7Z3G6 NM_198859
NP_942559
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PRICKLE2-003ENST000005643774242900aaENSP00000455004
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BNU0 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PRICKLE2-002ENST00000498162573150aaENSP00000419951
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JY03 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PRICKLE2-004ENST00000569824524140aaENSP00000456173
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BRB9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays