Description

calmegin [Source:HGNC Symbol;Acc:HGNC:2060]

INSDC coordinates

chromosome:GRCh38:CM000666.2:140388455:140427968:1

About this gene

This gene has 3 transcripts (splice variants), 69 orthologues, 3 paralogues, is a member of 1 Ensembl protein family and is associated with 113 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CLGN-001ENST000003256173043610aaENSP00000326699
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3751O14967 NM_004362
NP_004353
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
CLGN-201ENST000004147732820610aaENSP00000392782
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3751O14967 NM_001130675
NP_001124147
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
CLGN-004ENST00000509477706179aaENSP00000424593
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RAZ4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays