Description

calmegin [Source:HGNC Symbol;Acc:HGNC:2060]

INSDC coordinates

chromosome:GRCh38:CM000666.2:140388455:140427968:1

About this gene

This gene has 3 transcripts (splice variants), 70 orthologues, 3 paralogues, is a member of 1 Ensembl protein family and is associated with 113 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CLGN-001ENST000003256173043610aaENSP00000326699
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3751O14967 NM_004362
NP_004353
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CLGN-201ENST000004147732820610aaENSP00000392782
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3751O14967 NM_001130675
NP_001124147
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CLGN-004ENST00000509477706179aaENSP00000424593
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RAZ4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays