Description

serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) [Source:HGNC Symbol;Acc:HGNC:1546]

Synonyms

CBP1, CBP2, colligen, HSP47, SERPINH2

Location
INSDC coordinates

chromosome:GRCh38:CM000673.2:75562056:75572783:1

Transcripts

This gene has 15 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
SERPINH1-006ENST000005245583391418 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8239A0A024R5K8 B4DN87 E9PIG2
E9PJH8 E9PK86 E9PKH2
E9PMI5 E9PNX1 E9PR70
E9PRS3 P50454 Q9NPA9
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
SERPINH1-001ENST000005336032299418 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8239A0A024R5K8 B4DN87 E9PIG2
E9PJH8 E9PK86 E9PKH2
E9PMI5 E9PNX1 E9PR70
E9PRS3 P50454 Q9NPA9
NM_001207014
NP_001193943
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
SERPINH1-004ENST000003581712225418 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8239A0A024R5K8 B4DN87 E9PIG2
E9PJH8 E9PK86 E9PKH2
E9PMI5 E9PNX1 E9PR70
E9PRS3 P50454 Q9NPA9
NM_001235
NP_001226
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
SERPINH1-009ENST000005258762283201 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PKH2 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SERPINH1-003ENST000005302841358324 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PIG2 E9PJH8 E9PK86
E9PMI5 E9PNX1 E9PPV6
E9PR70 E9PRS3 Q9NPA9
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SERPINH1-018ENST00000532356998295 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PIG2 E9PJH8 E9PK86
E9PMI5 E9PNX1 E9PR70
E9PRS3 Q9NPA9
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SERPINH1-016ENST00000525611974247 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PIG2 E9PJH8 E9PK86
E9PNX1 E9PRS3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SERPINH1-011ENST00000526397882249 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PIG2 E9PJH8 E9PK86
E9PMI5 E9PNX1 E9PRS3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SERPINH1-017ENST00000528760773203 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PIG2 E9PJH8 E9PNX1
E9PRS3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SERPINH1-012ENST00000529643660167 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PIG2 E9PJH8 E9PRS3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SERPINH1-014ENST00000528990587165 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PIG2 E9PJH8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SERPINH1-015ENST00000533449582150 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PJH8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SERPINH1-013ENST00000525492529142 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PQ34 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SERPINH1-010ENST0000052624247486 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PLA6 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SERPINH1-019ENST0000052663871956 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays