Description

hyaluronan and proteoglycan link protein 1 [Source:HGNC Symbol;Acc:HGNC:2380]

Synonyms

CRTL1

Location
INSDC coordinates

chromosome:GRCh38:CM000667.2:83637805:83721613:1

About this gene

This gene has 7 transcripts (splice variants), 62 orthologues, 8 paralogues, is a member of 1 Ensembl protein family and is associated with 128 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
HAPLN1-001ENST000002743415607354aaENSP00000274341
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4061A0A024RAK9 P10915 NM_001884
NP_001875
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

HAPLN1-002ENST000005144161145161aaENSP00000421726
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RAK7 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HAPLN1-006ENST00000510978989258aaENSP00000422592
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RBS1 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HAPLN1-004ENST00000504713823169aaENSP00000422522
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RBX9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HAPLN1-005ENST00000508307799199aaENSP00000421341
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RG04 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HAPLN1-007ENST00000503117568182aaENSP00000426610
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RFI7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HAPLN1-003ENST00000515590560153aaENSP00000423836
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RC59 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays