Description

villin 1 [Source:HGNC Symbol;Acc:HGNC:12690]

Synonyms

D2S1471, VIL

INSDC coordinates

chromosome:GRCh38:CM000664.2:218419092:218453295:1

About this gene

This gene has 5 transcripts (splice variants), 52 orthologues, 7 paralogues, is a member of 1 Ensembl protein family and is associated with 123 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
VIL1-001ENST000002484446531827aaENSP00000248444
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2417P09327 NM_007127
NP_009058
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

VIL1-002ENST000003921141968516aaENSP00000375962
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B4DV78 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
VIL1-003ENST000004400531454421aaENSP00000409270
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-P09327 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
VIL1-005ENST00000419986639213aaENSP00000394030
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7C0B6 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

VIL1-004ENST00000454069532158aaENSP00000412657
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J2B5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays