Description

RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9857]

Synonyms

DKFZp586H0723, K-REV, RAL1B

Location
INSDC coordinates

chromosome:GRCh38:CM000674.2:68610839:68671901:1

Transcripts



This gene has 33 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
RAP1B-001ENST0000025055913438184 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8984A0A024RB87 B7ZB78 F5GWU8
F5GX62 F5GYH7 F5GZG1
F5H004 F5H077 F5H0B7
F5H491 F5H4H0 F5H500
F5H6R7 F5H823 F8WBC0
P61224
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
RAP1B-002ENST000003934362049184 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8984A0A024RB87 B7ZB78 F5GWU8
F5GX62 F5GYH7 F5GZG1
F5H004 F5H077 F5H0B7
F5H491 F5H4H0 F5H500
F5H6R7 F5H823 F8WBC0
P61224
NM_001010942
NM_015646
NP_001010942
NP_056461
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
RAP1B-007ENST000004502141466142 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58254B7ZB78 F5H823 P61224
NM_001251917
NM_001251918
NP_001238846
NP_001238847
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
RAP1B-009ENST000005402091264165 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58253B7ZB78 F5H823 F8WBC0
P61224
NM_001251921
NP_001238850
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
RAP1B-006ENST000005374601072184 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8984A0A024RB87 B7ZB78 F5GWU8
F5GX62 F5GYH7 F5GZG1
F5H004 F5H077 F5H0B7
F5H491 F5H4H0 F5H500
F5H6R7 F5H823 F8WBC0
P61224
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
RAP1B-011ENST000005421451060137 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58252F5GYH7 F5H4H0 F8WBC0
P61224
NM_001251922
NP_001238851
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
RAP1B-010ENST00000539091977142 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58254B7ZB78 F5H823 P61224
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
RAP1B-018ENST00000341355714184 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8984A0A024RB87 B7ZB78 F5GWU8
F5GX62 F5GYH7 F5GZG1
F5H004 F5H077 F5H0B7
F5H491 F5H4H0 F5H500
F5H6R7 F5H823 F8WBC0
P61224
-TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
RAP1B-008ENST000003789851017118 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZB78 F5H823 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
RAP1B-021ENST00000543393874118 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZB78 F5H823 -TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
RAP1B-013ENST00000425247855157 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7ESV4 F5GWU8 F5GX62
F5GYH7 F5H004 F5H077
F5H0B7 F5H491 F5H4H0
F5H500 F5H6R7 F8WBC0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-030ENST00000543697734136 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5GWU8 F5GYB5 F5GYH7
F5H077 F5H0B7 F5H491
F5H4H0 F5H500 F8WBC0
-TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
RAP1B-004ENST00000541216701179 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7ESV4 F5GWU8 F5GX62
F5GYH7 F5H004 F5H077
F5H0B7 F5H491 F5H4H0
F5H500 F5H6R7 F5H7Y6
F8WBC0
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
RAP1B-019ENST00000545270640122 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5GWU8 F5GYH7 F5H077
F5H0B7 F5H491 F5H4H0
F5H500 F5H6R7 F8WBC0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-022ENST0000054201863398 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5GWU8 F5GYH7 F5H077
F5H0B7 F5H491 F5H4H0
F8WBC0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-024ENST0000053489960687 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5GWU8 F5GYH7 F5H077
F5H4H0 F8WBC0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-015ENST00000538283591101 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5GWU8 F5GYH7 F5H077
F5H0B7 F5H491 F5H4H0
F5H500 F8WBC0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-020ENST00000538980587122 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5GZG1 F5H823 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-025ENST00000540781571139 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5GWU8 F5GX62 F5GYH7
F5H004 F5H077 F5H0B7
F5H491 F5H4H0 F5H500
F5H6R7 F8WBC0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-014ENST0000054116756193 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5GWU8 F5GYH7 F5H077
F5H491 F5H4H0 F8WBC0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-017ENST0000048947356111 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-031ENST0000054572055285 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5GYH7 F5H077 F5H4H0
F8WBC0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-029ENST0000053887755053 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5GYH7 F5H4H0 F8WBC0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-023ENST00000453560530127 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5GWU8 F5GYH7 F5H004
F5H077 F5H0B7 F5H491
F5H4H0 F5H500 F5H6R7
F8WBC0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-026ENST00000535492509103 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5H823 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-028ENST0000054138648011 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-016ENST0000042235846832 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8WBC0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-027ENST0000048525231248 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5H4H0 F8WBC0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-005ENST00000463493781No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-003ENST00000460800755No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-012ENST000005014121488No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-032ENST00000544639531No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

RAP1B-033ENST00000541968478No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays