Description

surfactant protein A1 [Source:HGNC Symbol;Acc:HGNC:10798]

Synonyms

COLEC4, SFTP1, SP-A, SP-A1

Location
INSDC coordinates

chromosome:GRCh38:CM000672.2:79610939:79615455:1

Transcripts

This gene has 6 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
SFTPA1-201ENST000003986362212248 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44445A0A024QZP2 B4DNR9 B4DNW5
B7Z4Y4 Q8IWL2
NM_001164644
NM_001164646
NM_005411
NP_001158116
NP_001158118
NP_005402
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
SFTPA1-008ENST000004194702210263 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44444A0A024QZP2 B4DNR9 B4DNW5
B7Z4Y4 Q8IWL2
NM_001093770
NM_001164645
NP_001087239
NP_001158117
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SFTPA1-202ENST000004283762141248 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44445A0A024QZP2 B4DNR9 B4DNW5
B7Z4Y4 Q8IWL2
NM_001164647
NP_001158119
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
SFTPA1-009ENST00000439264596158 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q8IWL2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SFTPA1-007ENST00000429958527158 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q8IWL2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SFTPA1-011ENST00000486922342No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays