Description

homeobox A7 [Source:HGNC Symbol;Acc:HGNC:5108]

Synonyms

HOX1, HOX1A

Location
INSDC coordinates

chromosome:GRCh38:CM000669.2:27153716:27157936:1

About this gene

This gene has 3 transcripts (splice variants), 51 orthologues, 15 paralogues, is a member of 2 Ensembl protein families and is associated with 50 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
HOXA7-001ENST000002421592018230aaENSP00000242159
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5408P31268 NM_006896
NP_008827
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

HOXA7-002ENST0000051984258530aaENSP00000428563
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E5RHM9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HOXA7-003ENST00000523796472No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays