Description

lysozyme-like 1 [Source:HGNC Symbol;Acc:HGNC:30502]

Synonyms

LYC2, MGC33408

Location
INSDC coordinates

chromosome:GRCh38:CM000672.2:29289061:29318328:1

About this gene

This gene has 2 transcripts (splice variants), 50 orthologues, 8 paralogues, is a member of 1 Ensembl protein family and is associated with 40 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
LYZL1-001ENST00000375500815194aaENSP00000364650
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS31174A0A080YUZ8 Q6UWQ5 NM_032517
NP_115906
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

LYZL1-002ENST00000494304637106aaENSP00000434629
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H0YDZ2 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays