Description

solute carrier family 46, member 2 [Source:HGNC Symbol;Acc:HGNC:16055]

Synonyms

Ly110, TSCOT

INSDC coordinates

chromosome:GRCh38:CM000671.2:112878920:112890913:1

About this gene

This gene has 2 transcripts (splice variants), 64 orthologues, 2 paralogues, is a member of 1 Ensembl protein family and is associated with 50 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SLC46A2-001ENST000003742282502475aaENSP00000363345
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6786A0A024QYV1 Q9BY10 NM_033051
NP_149040
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SLC46A2-002ENST000004914621890341aaENSP00000474847
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-S4R3Y2 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gene-based displays