Description

patched 2 [Source:HGNC Symbol;Acc:HGNC:9586]

Location
INSDC coordinates

chromosome:GRCh38:CM000663.2:44819844:44843063:1

About this gene

This gene has 3 transcripts (splice variants), 61 orthologues, 6 paralogues, is a member of 2 Ensembl protein families and is associated with 3 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
PTCH2-201ENST0000044709842981146aaENSP00000389703
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS53312Q9Y6C5 NM_001166292
NP_001159764
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PTCH2-001ENST0000037219242251203aaENSP00000361266
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS516Q9Y6C5 NM_003738
NP_003729
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P3

PRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PTCH2-002ENST00000438067111088aaENSP00000413169
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y7J2 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays