Description

nuclear receptor subfamily 2, group E, member 1 [Source:HGNC Symbol;Acc:HGNC:7973]

Synonyms

TLL, TLX, XTLL

INSDC coordinates

chromosome:GRCh38:CM000668.2:108166058:108188809:1

About this gene

This gene has 4 transcripts (splice variants), 65 orthologues, 11 paralogues, is a member of 2 Ensembl protein families and is associated with 79 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
NR2E1-001ENST000003689863212385aaENSP00000357982
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5063B6ZGT9 Q9Y466 NM_003269
NP_003260
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

NR2E1-002ENST000003689832612422aaENSP00000357979
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS69165Q9Y466 NM_001286102
NP_001273031
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
NR2E1-003ENST0000042640351746aaENSP00000416908
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A6PVF6 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

NR2E1-004ENST00000484978511No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays