Description

C-type lectin domain family 4, member A [Source:HGNC Symbol;Acc:HGNC:13257]

Synonyms

CLECSF6, DCIR, DDB27

Location
INSDC coordinates

chromosome:GRCh38:CM000674.2:8123632:8138607:1

About this gene

This gene has 5 transcripts (splice variants), 109 orthologues, 14 paralogues, is a member of 2 Ensembl protein families and is associated with 36 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CLEC4A-001ENST000002293321281237aaENSP00000229332
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8590Q9UMR7 NM_016184
NP_057268
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CLEC4A-004ENST00000345999841165aaENSP00000344646
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8591Q9UMR7 NM_194448
NP_919430
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLEC4A-002ENST00000352620615204aaENSP00000247243
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8592Q9UMR7 NM_194450
NP_919432
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLEC4A-005ENST00000360500597198aaENSP00000353690
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS41745Q9UMR7 NM_194447
NP_919429
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLEC4A-003ENST0000054633934984aaENSP00000443082
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YGF9 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays